SLURM job temps @UAlbany
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Updated
May 25, 2018 - Shell
SLURM job temps @UAlbany
A shiny app to perform single and multifactor differential analysis using DESeq2, edgeR, and limma
A cli for running multiple qsub jobs with HTSeq's htseq-count on a cluster.
Pipeline of somatic variant analysis using Waldenstrom macroglobulinemia patient’s RNA-seq data, including tools like STAR, HTseq, VarScan in parallel computing in SGE clusters, Deseq2 and GSEA in R
Build Docker container for HTSeq and (optionally) convert to Apptainer/Singularity
RNA seq pipeline designed for paired end reads using HTSEQ for producing files needed for visualizing transcriptomic data with DESEQ2
Python library to access Gene Expression Omnibus Database (GEO)
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