A useful python package for working on genomic coordinates.
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Updated
Feb 25, 2021 - Python
A useful python package for working on genomic coordinates.
App to identify if a given DNA sequence is present in a viral genome repository. If found, it also gives the location and the protein it was a part of.
Scrapes all the results of all the genome analysis performed by MiGA Online web tool and wirte them in a file.
Some snippet of code related to bioinformatics
A simple tool to generate hierarchical clustering trees from nucleotide sequences. Supports a number of distance metrics and clustering algorithms. Includes a large testset of SARSCOV2 genomes.
analyzer for phytozome gff files and pacid for genes.
ease of access gff files from tair for reading tair ids.
GRAMEP - Genome vaRiation Analysis from the Maximum Entropy Principle
genome annotation analyzer for the microbiome analysis
intergenic region analyzer from protein alignments to draft genomes.
This repository contains a python script which computes quality metrics for genome assemblies coming from FASTA file.
Illumina short read assembly data pipeline for phage
a sql python class to prepare the genome files for the sqlite3
easing your access to arabidopsis tair
A repository for efficient population genomic analysis using Snakemake workflow.
from genome annotations to visualizations.
plotting and summary information tools for the mRNA proteome to genome alignments.
Code (in progress) for analysis of historic and modern sequencing data of tiger cats.
protein-annotator python package for analyzing protein alignments to draft genomes.
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