Docker . module for the single cell toolkit
-
Updated
Sep 6, 2019 - Java
Docker . module for the single cell toolkit
GenePattern Module which implements the DiSCoVER algorithm
STREAM can be used to detect cell population-specific markers. This is similar to leaf branch marker gene detection. Here instead of comparing the gene expression values between leaf branches, we compare the gene expression values between cell populations
Step one of the STREAM ssRNA-Seq Trajectory pipeline
Actual creation of the Elastic Principa Graph in the STREAM scRNASeq Trajectory analysis, packaged as a GenePattern module
An optional final step to optimize branching, prune the graph or extend leaf nodes following generation of the Elastic Principal Graph
Generate the signature subway and stream plots
Detect differentially expressed genes between pairs of trajectory branches
Detect marker genes that distinguish the different trajectories
Detect transition genes for each branch of the trajectory.
Determine which tryptic peptides will generate the highest signal in ESI-MS
OpenCRAVAT as a GenePattern module
Imports data from the Gene Expression Omnibus (GEO)
Add a description, image, and links to the genepattern-module topic page so that developers can more easily learn about it.
To associate your repository with the genepattern-module topic, visit your repo's landing page and select "manage topics."