CocoTF: a workflow to identify context specific co-occurring TF motifs using bedtools, Homer and R packages.
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Updated
Jun 2, 2023 - Shell
CocoTF: a workflow to identify context specific co-occurring TF motifs using bedtools, Homer and R packages.
Implementation code for evaluating COMET approach on various simulation datasets
Repository of my internship in the RDDS lab of the University of Trento
Implementation of SRIQ clustering
PCA: Exploring transcriptome-wide changes using python (pandas/scikit-learn/matplotlib) 🧬 💻 👩🔬 🖥️
Differential expression analysis using R 🧬
This project is a comparative study of Autoencoder (AE) and Principal Component Analysis (PCA) for dimensionality reduction in gene expression data. It aims to understand the unique capabilities and applications of both methods in handling high-dimensional biological data.
Metabolic subtyping of tumors from gene expression data
Shiny app that recopilates all gene expression of zebra fish and informs about the tissue and developmental stage in which the gene is expressed.
A workflow to understand the changes in expression levels of epithelial cells in smokers.
A list of publicly available Microarray Gene Expression datasets with proper attribution and associated toolkits.
Predict the samplesizes for certain errorrates for statistical classifiers
This is the R code to extract Gene Expression Profiles of particular genes from GEO (Gene Expression Omnibus) datasets.
DPre is a bioinformatic tool that enables the user to explore cell type conversion/ differentiation experiments. DPre may take the expression or the differentially regulated genes of the samples to rate transcriptional similarity with a reference dataset, the targets.
An interactive Streamlit app for processing and visualizing GEO data from NCBI's Gene Expression Omnibus.
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