Link Gene Ontology IDs to cell types

NCBI Medical Genetics, UMLS Unified Medical Language System Concepts and PubMed linked citations

Simple utility functions for handling GO Terms in Python.

This is a version of topGO using roxygen2 and Rmd

GO prediction by STRING protein-protein interaction

The Tasmanian devil is endangered due to Devil Facial Tumour Disease (DFTD), a contagious cancer with no current treatment. Previous study has investigated the anticancer properties of Tasmanian devil cathelicidins. This report intends to reproduce the enrichment analysis results of the study and further analyze their data.

Set of small R scripts helpful in various bioinformatics projects

Functional analysis of metabolic and transcriptomic data

An efficient attention-based approach for Protein Function Prediction using skip-gram features. Proposing two novel approaches, namely, OntoPred and OntoPredPlus capable to annotate protein sequences accurately.

Plot gene ontologies

An R package for RNA-seq DGE downstream automation and clustering analysis

A tool to predict protein functions (Gene Ontology) via protein-protein and ontology networks

Protein function prediction through latent tensor reconstruction

GO Term Visualizations

RNA-seq pipeline to identify wasp-induced gene expression in Drosophila

Neuronal genes mutation interactions and analysis

Analysis of single and comparative transcriptomes

A powerful abstraction of gene databases

DeepMiR2GO: Inferring Gene Ontology Function of Human MicroRNAs based on a deep multi-label classification model