NicheNet: predict active ligand-target links between interacting cells
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Updated
Sep 5, 2024 - R
NicheNet: predict active ligand-target links between interacting cells
R/shiny interface for interactive visualization of data in SummarizedExperiment objects
One-step to Cluster and Visualize Gene Expression Matrix
R package to access DoRothEA's regulons
BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see https://bioconductor.org/packages/BASiCS/ for the official release version
integrated RNA-seq Analysis Pipeline
Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.
Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)
characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomics data with nonuniform cellular densities
Differential Gene Correlation Analysis
Evolutionary Transcriptomics with R
Interactive R package to quantify, analyse and visualise alternative splicing
A random-forest-based approach for imputing clustered incomplete data
Bayesian inference of clone-specific gene expression estimates by integrating single-cell RNA-seq and single-cell DNA-seq data
This tutorial is created for educational purpose
Descriptive probabilistic marker gene approach to single-cell pseudotime inference
Differential expression and allelic analysis, nonparametric statistics
ChIP-seq/RNA-seq analysis software suite for gene expression heatmaps
Cell-Centric View of Tissue Transcriptome Measuring Cellular Compositions of Immune Microenvironment From Mouse RNA-Seq Data.
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