Example workflows for refine.bio data
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Updated
Aug 1, 2023 - HTML
Example workflows for refine.bio data
Experimenting using cycleGAN to transform P. aeruginosa gene expression data between planktonic and biofilm conditions.
Transfer learning + gene expression
Investigating the functional relationship between P. aeruginosa core and accessory genes.
Data science project work with genomics/biological data
Jupyter notebook with a multimodal DBM example on SNP and gene expression data
Functions that implement the algorithms described in the preprint "Normalization and gene selection for single-cell RNA-seq UMI data using sampling-adjusted sums of squares of Pearson residuals with a Poisson model" and Jupyter notebooks that reproduce the results in the preprint and its Supplement 1
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