atlasBREX: Automated averaged template-derived brain extraction in animal MRI
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Jan 15, 2024 - Shell
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fsl
Here are 9 public repositories matching this topic...
A modified FSL version for use with Slurm
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Mar 14, 2018 - Shell
General utility scripts, documentation, and analysis tutorials for Smith Lab.
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Oct 20, 2023 - Shell
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Sep 17, 2021 - Shell
Reproduce BRATS preprocessing for a given patient (needed: 4 modalities T1, T2, T1c and FLAIR, optional: segmentation).
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Nov 5, 2019 - Shell
Code snippets for preprocessing DTI/MRI neuroimaging data
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Mar 26, 2024 - Shell
lnifmri_prep is a set of plain bash scripts to automate preprocessing and QC of fMRI data.
image-processing
bash-script
nifti
fsl
magnetic-resonance-imaging
quality-check
fmri-preprocessing
fmri-analysis
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Dec 22, 2022 - Shell
A simple script to deface (with use of fsl_deface) multiple T1/T2-weighetned files prepared according to the BIDS standard.
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Mar 3, 2023 - Shell
Explore the neural basis of cognitive control with this repository's in-depth analysis of the Flanker Dataset using fMRI. Using bash scripting to streamline preprocessing and ROI analysis, while incorporating R scripts to explore brain region activity during the task.
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May 19, 2024 - Shell
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