A repository containing ImageJ macros for the Snyder Lab
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Updated
May 10, 2019 - Python
A repository containing ImageJ macros for the Snyder Lab
A simple ImageJ Fiji macro to apply maths to every nth slice in a single-channel image, e.g. average every 5 frames and similar.
Calculates the colocalization of EVs.
MRI ImageJ related python (jython) module.
An ImageJ macro for 2D colocalization of IHC signals in ImageJ and counting RNAscope puncta within cells.
Useful scripts for saving multichannel fluorescence images for use in figures and saving relevant metadata
Image process framework to easily analyse fluorescent glioblastoma cells in pattern of neurons.
A simple macro to analysis spheroid areas
Python functions to run video analysis in Fiji. Reads output data from csv files and performs calculations in Python
Prairie 2-Photon Microscopy Data Manager for recursive batch processing ans analysis with Fiji
R-Scripts and Fiji-macro used for the construction of kymographs based on fluorescence profiles
ImageJ/Fiji macro to delete ROIs from image, ROI manager and Results table
This is a full macro for images analysis, cell count and co-staining cell count. Different options are available to analyse your image. You can count co-staining cell in unlimited number of images. the counting is done by size. There is an option to batch image analysis to save some time. You can personnalize the code and the analysis to maximiz…
ImageJ / Fiji macro to automatically export Leica LIF file as individual images (batch mode available)
ImageJ macro for normalization of time lapse images against a reference image
Fiji script for automated filopodia counting from single cell images.
ImageJ macros and plugins.
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