Set of tools to deal with sequences in FastQ format
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Updated
Mar 6, 2023 - Python
Set of tools to deal with sequences in FastQ format
Lossless compression of FASTQ sequences.
simple and convenient program to convert fasta sequences to fastq sequences
fdemux is a FASTA/FASTQ demultiplexer with support for (arbitrarily) fuzzy barcode matching, asymmetric barcoding, and parallel processing.
Illumina (and SOLiD) sensitive read mapping tool (cloned from svn:https://scm.gforge.inria.fr/svnroot/storm/, original code from @marta- , with some work done by @yoann-dufresne)
Filtering out invalid characters from fastq reads
Hadoop Sequence Parser (HSP) library
FLiCK - Format LeveragIng Compression frameworK
Provides graphical and .json output for paired-end Next-Generation Sequencing (NGS) data as well as genome coverage data from .bed files. Requires Python 3.9.1 or higher.
fxtools: light-weight processing tool for FASTA/FASTQ/BAM format data
SYLENS: Sampling Yielding LEss Noticeable Samples
Datastores for reads, not your papa's FASTQ files.
BioC++ Input/Output library
A secure encryption tool for genomic data
Parse and process FASTA and FASTQ formatted files of biological sequences.
FastQC port to Qt5: A quality control tool for high throughput sequence data.
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