Parse and process FASTA and FASTQ formatted files of biological sequences.
A secure encryption tool for genomic data
A naive implementation of a k-mer counter in Python, takes fasta files and k-mer length requests and outputs all k-mers of length k, their reverse complement, and their frequency within their respective sequence for each sequence in the file.
BioC++ Input/Output library
This package enables you to deal with biological sequence files easily.
A simple C library to extract the amino acid sequence from a file in PDB (Protein data bank) format and output to a FASTA format file.
Small package used to parse a file in the Fasta format
FLiCK - Format LeveragIng Compression frameworK
omicR It creates fasta files, downloads genomes from NCBI using the refseq number, creates databases to run BLAST+, runs BLAST+ and filters these results to obtain the best match per sequence. These scripts can be used to run BLAST alignment of short-read (DArTseq data). It only works with BLAST V 2.7 or under.
Python Scripts for Haim Lab (Microbiology Research) Projects
simple and convenient program to convert fasta sequences to fastq sequences
Hadoop Sequence Parser (HSP) library
Illumina (and SOLiD) sensitive read mapping tool (cloned from svn:https://scm.gforge.inria.fr/svnroot/storm/, original code from @marta- , with some work done by @yoann-dufresne)
Small and fast FASTA sequences length fetcher
Removes duplicate sequences in multifasta file
Idris (Idris2) port of the Haskell biocore library.
Java implementation of global alignment using a variation of Levenshteindistance. It takes first two sequences from fasta file and returns aligned sequences also in fasta format.
fakit: a simple program for fasta file manipulation
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