A Haskell script that takes in a configuration YAML to create and launch Cell Ranger count and/or vdj runs via LSF bsub commands accordingly.
-
Updated
Mar 23, 2021 - Haskell
#
cellranger
Here are 18 public repositories matching this topic...
10x Cell Ranger Docker Image
-
Updated
Sep 2, 2021 - Shell
WDLized Cell Ranger GEX
-
Updated
Nov 9, 2021 - WDL
WDLized Cell Ranger Cell Plex
-
Updated
Nov 13, 2021 - WDL
A Snakemake Workflow for using PolyA_DB and UCSC LiftOver with CellRanger
python
shell
workflow
snakemake
liftover
bioinformatics-pipeline
multiqc
reproducibility
transcriptomics
single-cell-rna-seq
fastqc
cellranger
-
Updated
Jan 27, 2022 - Python
Nextflow pipeline wrapper for executing Cell Ranger
-
Updated
Mar 8, 2022 - Nextflow
-
Updated
Mar 10, 2022 - Python
Basic scRNA-seq analysis in Seurat using GBM data
-
Updated
Sep 6, 2022
Repository of the master project in Bioinformatics at Lund University
-
Updated
Jan 16, 2023 - Jupyter Notebook
V(D)J T Cell and B Cell Analysis with cellranger vdj
-
Updated
Feb 4, 2023 - Shell
scRNA-seq analysis 2022 workshop hosted by UMICH's CDS-SR
-
Updated
Apr 26, 2023 - HTML
-
Updated
Jun 13, 2023 - Shell
用于bioos的大规模数据分析
python
workflow
bioinformatics
computational-biology
next-generation-sequencing
scrna-seq
spatial-analysis
atac-seq
cromwell
wdl-workflows
cellranger
bioinformatics-workflows
bioos
-
Updated
May 14, 2024 - WDL
A Snakemake workflow for analysing single cell data obtained from Cell ranger platform using Seurat package
-
Updated
Jun 14, 2024 - Python
simplified cellranger for long-read data
linux
bioinformatics
python3
bioinformatics-pipeline
pacbio
computational-science
10x-genomics
vdj-recombination
tcr-repertoire
single-cell-rna-seq
minimap2
spatial-transcriptomics
sc-rna-seq
computational-genomics
mixcr
cellranger
slide-seq
tcr-seq
nanoranger
-
Updated
Sep 18, 2024 - Python
A single-cell RNAseq pipeline for 10X genomics data
workflow
rna-seq
pipeline
nextflow
single-cell
kallisto
10x-genomics
10xgenomics
nf-core
bustools
alevin
cellranger
star-solo
-
Updated
Oct 30, 2024 - Nextflow
WDL workflow language program, developed for singlecell rna sequencing data analysis, maintained by @OOAAHH(SunHao) .
python
workflow
bioinformatics
scrna-seq
spatial-analysis
atac-seq
cromwell
wdl-workflow
cellranger
starsolo
-
Updated
Oct 30, 2024 - WDL
Improve this page
Add a description, image, and links to the cellranger topic page so that developers can more easily learn about it.
Add this topic to your repo
To associate your repository with the cellranger topic, visit your repo's landing page and select "manage topics."