ImageJ and Fiji Plugin for fast, variational 1D alignment of multichannel linescan data
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Updated
Apr 15, 2021 - Java
ImageJ and Fiji Plugin for fast, variational 1D alignment of multichannel linescan data
Repository for the article "Distributed chromatic processing at the interface between retina and brain in the larval zebrafish", Guggiana et al. 2021, Curr. Bio.
A collection of useful methods for handling, processing, and visualizing calcium imaging data.
Spike inference algorithm using frequency-domain FRI framework
2-Photon Imaging Data Registration/Alignment Across Recording Days. Created for Apostolides Lab, rotation 2, Fall 2020.
CalciumImaging analysis matlab pipeline for suite2p outputs
Toolbox for fast, variational 1D alignment
Code to analyze calcium imaging data in Algamal et al. 2022, doi: https://doi.org/10.1101/2022.04.27.489759
Calcium signal processing algorithm for automated analysis of intracellular calcium responses
Scripts for extraction and analysis of widefield calcium data from awake behaving mice.
Custom code (Python or Matlab) to compute centripetal propagation from astrocytic calcium recordings using pixel-wise correlation functions
repository of the project team 044-Armored-newt-with-lasers from Neuromatch Academy 2020
[Pillow] Denoising Images retrieved from Confocal Calcium Imaging.
A lab rotation with the systems neuroscience lab, University of Tuebingen, where we tested whether color contrast contributed to encoding motion in direction selective cells of the zebrafish optic tectum.
PKGBUILD of CaImAn for Archlinux
🧠 Adaptive Platform for Neuroscience Experiments
Experiment automation for Coherent's Monaco Laser
Computational Neuroscientists' Comprehensive Neuronal Simulator
Mesmerize plugin for the napari viewer
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