Analysis pipeline for bulk RNA-seq data
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Updated
Aug 18, 2022 - Python
Analysis pipeline for bulk RNA-seq data
R Notebook with scripts for running the deconvolution of thymus bulk data identifying T-cell proportions
bulk-RNAseq analysis for Transcriptomics Course 2021 (MSc Bioinformatics for Computational Genomics)
Dalmolin Group's workflow for pre-processing, alignment and quantification of bulk RNA-seq data
In this repository, I try to replicate the results of Rodriguez2017
GenoCraft: A Comprehensive, User-Friendly Web-Based Platform for High-Throughput Omics Data Analysis and Visualization
scRNA Analysis tutorials
habenulaPilot project code repository
SCDC project, originally on: https://github.com/meichendong/SCDC. Support sparse matrix among other additions.
Multi-subject Single Cell Deconvolution
Project for the Transcriptomic course of "Bioinformatics for Computational Genomics" MSc
An R package pipelining omics-based cancer survival analysis
RNA-seq pipeline, based on the ENCODE uniform processing pipeline
my_RNA_seq_pipelines
Deconvolution of CRC in organoid and fibroblast bulk data identifying epithelial cell types proportions
Bulk RNA-seq analytical pipeline, including using Snakemake to run main steps such as Kallisto read mapping, QC, Principal Component Analysis (PCA), and other downstream analysis.
DecoFlex deconvolution method for Omic data implemented as DecoFlexR
CATD: Critical Assessment of Transcriptomics Deconvolution
A script used to calculate percent spliced-in (PSI) values from bulk RNA sequencing data.
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