Scripts for Basecalling on GridION Sequenicng machines from Oxford Nanopore

CocoTF: a workflow to identify context specific co-occurring TF motifs using bedtools, Homer and R packages.

A script that efficiently processes multiple '.fastq' files, automatically organizing the pre-trimmed output into a folder named 'qc_reports_pretrim' for streamlined quality control and sequence data analysis.

Shell script to post-process OrthoFinder's output into pairwise tables used in macrosyntR

Toolbox for comparative genomics

Detection of differentially expressed genes from bulk RNA-seq data

Computational analysis of the evolutionarily conserved Missing In Metastasis / Metastasis Suppressor 1 gene predicts novel interactions, regulatory regions and transcriptional control (Petrov et al. 2019 Sci Rep)

Extracts information from GFF and prepare them in bed format

script to perform amplicon sequencing analysis for Norovirus genotypes and variants

Adjustments to bschiffthaler/ngs docker

Set of scripts to process RAD-Seq HTS data on computing grids like MetaCentrum.

Pipeline to prepare RNA sequencing data for tandem repeat annotation with TRAL

Bioinformatics projects and linux scripts.

Bu sayfada Biyoinformatik analizler ile ilgili eğitim materyalleri bulunmaktadır.

Assorted scripts in Perl, Bash, R and whatsoever directly from a bioinformatician's scripts/ folder

SLURM job temps @UAlbany

Synchronise Nanopore reads with a server.

Set of scripts to run STRUCTURE in parallel on computing grids like MetaCentrum. Scripts are designed for grids and clusters using PBS Pro, but can be easily adopted for another queue system.

A Python workflow for taking chemicals, finding the genes they interact with, and mapping the communities of genetic interactions.