Align SARS-CoV-2 sequences against a reference genome, and trim UTR sequences
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Updated
Jun 10, 2021 - Nextflow
Align SARS-CoV-2 sequences against a reference genome, and trim UTR sequences
CutNtag pipeline for Pasini's lab written in snakemake
Pipeline to make pairwise comparisons of matched fasta sequences.
Whole exome sequencing snakemake workflow based on GATK best practice
main Repository for my Master's Thesis work
Snakemake pipeline for meta-analysis of functional screening data
Grafting plays a pivotal role in modern agriculture, providing myriad benefits for both farmers and plants
HMMER-based microcin search using full microcin sequences and double-glycine signal region.
Repository for variant calling utilizing bioinformatics tools and databases
Perform basic QC on illumina data
A pipeline to estimate the rate of purifying selection acting on stop codons of ortholog clusters from OrthoDB.(Based on https://github.com/cseoighe/StopEvol)
Small rna pipeline. Category:Multi-Sample
Perform basic QC on illumina data
Gene Polymorphisms Among Plasmodium vivax Geographical Isolates and the Potential as New Biomarkers for Gametocyte Detection
Analysis of variance (ANOVA) is a collection of statistical models and their associated estimation procedures (such as the "variation" among and between groups) used to analyze the differences among means.
biopatternsg is a system that builds gene regulatory networks from a basic collection of biological objects, gathering and processing PubMed abstracts, using Internet available informational resources like Mesh, GeneOntology, UniProt, PDB and others, and that uses java and logical engines like prolog to integrate and analyse them.
Bioinformatics-pipeline in snakemake.
Set of scripts to process RAD-Seq HTS data on computing grids like MetaCentrum.
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