Docker to run Whippet for splicing quantification and analysis
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Updated
Jul 18, 2017
Docker to run Whippet for splicing quantification and analysis
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Docker to run VAST-TOOLS for splicing quantification and analysis
Alternative splicing annotation for AnnotationHub
IsoAligner: dynamic mapping of amino acid positions across protein isoforms
This repository contains all the studies made in colaboration with IMIBIC
Analysis of RNA-Seq data for approximately 3500 breast tumors from the SCAN-B project to investigate differential splicing patterns between molecular subtypes and clinical phenotypes
Algorithm to infer clusters of isoorthologous transcripts using gene-level homology relationships and a Reciprocal Best Hits approach
A tool to model the evolution and structural impact of alternative splicing
Code and scripts for the RNA-seq analysis of project: SMG5-SMG7 authorize nonsense-mediated mRNA decay by enabling SMG6 endonucleolytic activity
Variation in Gene caused by Mutation and Alternative Splicing: Identification and Characterization of Pathogenic Variants in TRY, OCA2, HPS-1 and OA1 Genes that leads to Albinism
Spicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data
This study is using scRNA-seq to study the expression and regulation of alternative splicing (AS) events in single cells
Method for retrieving and visualising the protein domains of any protein coding isoform and of different genomes. Enables joint visualisations representing alternative splicing events.
Depository for Bioinformatics Master Project HT2022-VT2023
This repository is the current repository for our Jones et al. 2024 manuscript titled Long-read RNA sequencing identifies region- and sex-specific C57BL/6J mouse brain mRNA isoform expression and usage.
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