Source code of the Bgee pipeline used to build the Bgee database
-
Updated
Jul 30, 2024 - Perl
Source code of the Bgee pipeline used to build the Bgee database
A pipeline for determining the genomic location and transformation rules for the variants described in Illumina or Affymetrix genotype panel manifest files.
Affymetrix CytoScan (750k / HD) processing using apt-copynumber-cyto-ssa (2.4.0)
Smarter database repository
🔬 R package: Analysis of Large Affymetrix Microarray Data Sets
read Affymetrix .CEL files
Differential Expression Analysis Pipeline
Analysis of gene expression in umbilical cord blood from ASD, Non-TD, and TD subjects in the MARBLES and EARLI studies
Creates a GCT file from a set of CEL files from Affymetrix ST arrays.
App to illustrate the history of transcript cluster annotations of the Affy array HTA2.0
A collection of miscellaneous bioinformatics scripts
Affymetrix OncoScan / OncoScan_CNV processing using apt-copynumber-onco-ssa (2.4.0)
Affymetrix GenomeWideSNP_6 processing using apt-copynumber-workflow (1.20.0)
R scripts & functions for SNP data analysis of genotyping data from Affymetrix Axiom arrays
Gene expression experiments using Python and R
Various python programs I use for the manipulation of SNP genotype datasets and other bioinformatics tasks. This repository features miscellaneous scripts to help work efficiently in common bioinformatics tasks I encounter. Use at own risk
Add a description, image, and links to the affymetrix topic page so that developers can more easily learn about it.
To associate your repository with the affymetrix topic, visit your repo's landing page and select "manage topics."