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trio analysis recommendation #75
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Hello @prasundutta87, Do you mean you want to obtain the SV calls for the child with the aid of the parental samples? Best regards, |
Hi Tao, Thanks for the reply. I have sequences for all three samples: father, mother and child and my intension is to filter variants based on mendellian inheritence, like the example you specified. Like for example using bcftools +mendelian? Regards, |
Hi,
I will be performing trio analysis for SVs. Is there any recommendation for trio analysis using cuteSV (joint genotyping or any tested workflow)? I will be using minimap2 as an aligner.
Regards,
Prasun
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