An awesome list of proteomics tools and resources

A curated list of awesome Deep Learning tutorials, projects and communities.

biotoolsregistry : discovery portal for bioinformatics

Fast and flexible semi-supervised learning for peptide detection in Python

Python library for processing (tandem) mass spectrometry data and for computing spectral similarities.

pepy is a site to get statistics information about any Python package.

Ultrafast, comprehensive peptide identification for mass spectrometry–based proteomics

Retention time prediction

A plotting tool that outputs Line Rider maps, so you can watch a man on a sled scoot down your loss curves. 🎿

DuckDB is an analytical in-process SQL database management system

Create synthetic DIA LC-MS/MS for proteomics experiments

COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)

The Biochemical Algorithms Library in Julia

in silico Spectral Predictor Informed REscoring

A latent text-to-image diffusion model

Interactive deep learning book with multi-framework code, math, and discussions. Adopted at 500 universities from 70 countries including Stanford, MIT, Harvard, and Cambridge.

scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.

A diaPASEF spectrum-centric analysis tool

Fundamentals public repo

Pixel sorting images in python.

YOLOv10: Real-Time End-to-End Object Detection [NeurIPS 2024]

Bioinformatics I/O libraries in Rust

Linear algebra library for Rust.

Python package for efficient mass spectrometry data processing and visualization

Democratizing ML in proteomics

HUPO-PSI Standardized peptidoform notation

MassBank of North America (MoNA) is a metadata-centric, auto-curating repository designed for efficient storage and querying of mass spectral records. The MoNA server is a set of Spring microservic…