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Issues list

how to visualize arriba results for a cohort?
#244 by complexgenome was closed Jul 1, 2024
1
Multimapper filter vs malformed SAM records - how many alignments is "too many"?
#243 by ascidwu was closed Jun 24, 2024
11
custom gtf file
#241 by sotaro-kanematsu was closed Jul 6, 2024
7
Fusion transcript mismatch between the same breakpoints
#240 by gitgodgot was closed May 24, 2024
2
Arriba and STARfuison align
#239 by xiucz was closed Jun 12, 2024
7
The interpretation of the contents of the result file fusions.tsv.
#238 by jiaanqiang was closed May 1, 2024
2
Identifying gene fusions in plant genomes.
#237 by jiaanqiang was closed Apr 9, 2024
3
Criteria of selecting specific transcripts
#236 by sotaro-kanematsu was closed Apr 17, 2024
5
Issues with Missing Exon Coordinates Using "draw_fusions.R"
#235 by Rustam86 was closed Mar 23, 2024
1
Error while running draw_fusion.R
#234 by Rezwanuzzaman was closed Jul 6, 2024
8
Error occured while I running draw_fusion.R
#233 by Zhengfy1022 was closed Mar 21, 2024
2
Issue with Dragen BAM encountering std::out_of_range error in version [v2.4.0]
#232 by avilaHugo was closed Mar 11, 2024
8
Problem detection exom skipped
#231 by zgtman was closed Feb 15, 2024
2
Single-End vs Paired-End behaviour for split1/2, discordant and coverage counts
#230 by ahwanpandey was closed Mar 10, 2024
14
Finding fusions and counting supporting reads zsh: killed
#228 by jdjdj0202 was closed Jan 24, 2024
3
Known canonical fusion reported with zero reads - need help to understand the output
#227 by renjukrishna13 was closed Feb 15, 2024
1
Error in merging adjacent breakpoints?
#226 by karlestira was closed Jan 3, 2024
2
Is it possible to have draw_fusions.R output the exon number in text?
#223 by ahdee was closed Nov 18, 2023
4
zsh: exec format error: ./arriba
#222 by jdjdj0202 was closed Dec 3, 2023
5
Using a genome not supported
#221 by gabi-ryan was closed Feb 15, 2024
3
Reference Genome
#220 by bshim181 was closed Mar 9, 2024
2
Arriba output filtering
#219 by teresa1997 was closed Feb 15, 2024
5
coverage < split_reads
#217 by Benoitdw was closed Oct 18, 2023
1
Can I use the latest Gencode GTF file ?
#216 by JeWeizhong was closed Oct 5, 2023
1
The CBFB::MYH11D fusion gene is discarded by the 'blacklist' filter, but it is not found in the blacklist file.
#215 by bioPG was closed Sep 13, 2023
3
ProTip! Adding no:label will show everything without a label.