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explanation of the df from subsetCommunication #750
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@amberqiong Yes, you can compare the value between two datasets. the 'prob' column represent the communication probability (strength) |
Thank you for the clarification!
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Is there a defined threshold for the 'prob' column that signifies strong communication? |
@amberqiong no threshold is for |
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Hello,
Thanks for the wonderful cellchat tool! I have some questions regarding regarding the explanation of the dataframe from
subsetCommunication()
. Does the 'prob' column represent the communication probability (strength)? Can I directly compare this value between two datasets to assess if the signaling is up-regulated or down-regulated?lipo.control.signaling.df=subsetCommunication(object.list[[1]],sources.use = c(1:3),targets.use = c(1:3)) lipo.PA.signaling.df=subsetCommunication(object.list[[2]],sources.use = c(1:3),targets.use = c(1:3))
My goal is to identify the list of the differential signaling, and then comparing to other dataset (find common changed pathways).
Thanks in advance.
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