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Question about parameter selection in scale.factors? #721

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qijt123 opened this issue Oct 29, 2023 · 1 comment
Open

Question about parameter selection in scale.factors? #721

qijt123 opened this issue Oct 29, 2023 · 1 comment

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@qijt123
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qijt123 commented Oct 29, 2023

When I want to calculate cell interactions in the spatial transcriptome based on Slide-seq v2 technology, how should I choose the two values of spot.diameter and spot in the scale.factors?
@sqjin
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sqjin commented Nov 4, 2023

do you have any information on the unit of the spatial corordinates in slide-seq v2? Are they in micrometers or pixels?

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