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This repository has been archived by the owner on Jan 24, 2024. It is now read-only.
Cellchat for ST data requires a dataframe consisting of the cell labels.
We used CytoSPACE for cell annotation using external reference scRNAseq data. The CytoSPACE provides more than one cell type (different fraction) per spot ID.
Hi,
Cellchat for ST data requires a dataframe consisting of the cell labels.
We used CytoSPACE for cell annotation using external reference scRNAseq data. The CytoSPACE provides more than one cell type (different fraction) per spot ID.
SpotID | CellType
TCGCGTAGCAGTGTCC-1 | mast_cell
TCGCGTAGCAGTGTCC-1 | NK_cell
Now how to deal with this?
thanks
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