Skip to content
This repository has been archived by the owner on Jan 24, 2024. It is now read-only.

netP list has a length of 0, several downstream analyses not possible #666

Closed
jfraddix opened this issue Aug 9, 2023 · 0 comments
Closed

Comments

@jfraddix
Copy link

jfraddix commented Aug 9, 2023

Hi @sqjin,

thank you so much for the great tool!

I have been working on the tutorial humanSkin dataset as provided online.
After using the cellchat <- computeCommunProb(cellchat, raw.use = TRUE) command, everything works fine. Apart from that I encounter the netP list to not contain anything. (Length of list = 0).
Meaning that I cannot run most of the downstream analyses that require the netP like in PartIV: Systems analysis of cell-cell communication network.

Is there something specifically that I should check beforehand? I assume that the netP list should encounter all the different pathways as necessary for computing a network centrality score for example.

Thank you so much!

Sign up for free to subscribe to this conversation on GitHub. Already have an account? Sign in.
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant