inferCNV Error in plot.new() : figure margins too large

[haobeny]

Hello Sir,
As it displayed that :
Quantiles of plotted data range: 0.801789707392004,0.961364829243526,1,1.03875132892628,1.20534481461366
Error in plot.new() : figure margins too large
when runing infercnv_obj = infercnv::run(infercnv_obj,
cutoff=0.1,
out_dir='inferCNV/output/',
cluster_by_groups=TRUE,
denoise=TRUE,
HMM=TRUE)
I checked the helper document and still did not find how to adjust the parameter. Whether are there anybody meet the same issue, Really appriciate your help.

[xizhihui]

You can set plot = FALSE (or a parameter like it) to skip plot figures when running. Then use the plot_cnv function from infercnv to adjust your plots, or extract related data to make heatmap by other tools like pheatmap,heatmap, or complexheatmap

[haobeny]

really apprecitate your help. I just modified the parameter plot as you said, it does work.

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