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normalized data #601

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Imm123 opened this issue Apr 24, 2023 · 2 comments
Closed

normalized data #601

Imm123 opened this issue Apr 24, 2023 · 2 comments

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@Imm123
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Imm123 commented Apr 24, 2023

Hi,

I was wondering if I can normalized the data using log2(rawcounts +1). My input is bulk rna seq
I tried to use normalized data function but I got a matrix of all values = 0

@sqjin
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sqjin commented Apr 24, 2023

@Imm123 scRNA-seq data are usually normalized using ln(rawcounts +1). For bulk data , you can use this normalization method or quantile method.

@Imm123
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Imm123 commented Apr 25, 2023

Thanks!

@Imm123 Imm123 closed this as completed Apr 25, 2023
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