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The difference between the weight and prob #555

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Kiven-zero-Li opened this issue Feb 18, 2023 · 1 comment
Open

The difference between the weight and prob #555

Kiven-zero-Li opened this issue Feb 18, 2023 · 1 comment

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@Kiven-zero-Li
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Hello, thank you for this package!
I have some confusions when using it. After I created the cellchat object, I have seen two matrix: cellchat@net$prob and cellchat@net$weight, and they are different. If the former one is used to describe the interaction weights/strength, what about the latter one: cellchat@net$weight? What is it used to?
Looking forward to your reply! This is very important for me. Thank you!

@songmingl
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weight is the sum of prob of all significant interactions (p < 0.05) between two cell groups.

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