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A question about function of circleplot #3

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BeyondMyPast228 opened this issue Jul 28, 2020 · 1 comment
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A question about function of circleplot #3

BeyondMyPast228 opened this issue Jul 28, 2020 · 1 comment

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@BeyondMyPast228
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Hi,
Thanks for developing CellChat, which is very user-friendly and convenient. But I don't know what to do when I want to draw a circleplot of all the functional pathways.
The code is netVisual_aggregate(cellchat, signaling = pathways.show, layout = "circle", vertex.size = groupSize). So, Should I enter all the pathways manually? After I manually enter all the pathways, the title of circleplot got farraginous.
I sincerely hope to get your reply.

@sqjin
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sqjin commented Jul 28, 2020

@BeyondMyPast228 Hello, you can use for..loop to save all the plots from all the signaling pathways. Please check the tutorial here.

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