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re-order RLpairs on bubble plots #168
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@hooperj I will look into the codes and try to modify it in next two days. |
Hi~ I have same question. How could we reorder LRs when using netVisual_bubble? |
Hi, I've met a problem that when I reordered the cell pairs by changing the order in source.use and target.use, it failed and ordered as the initial letter rank. Could you explain it for me? Thanks a lot |
Hi~ I have same problem. How could we reorder LRs when using netVisual_bubble? |
I still have the problem. Could you tell me how to reorder the cell pairs in a merge cellchat object and how to reorder the L-R pair in netVisual_bubble, thank you very much! |
@LipingChen0607 You should be able to fix the order of L-R pairs by providing |
@sqjin When I provide pairLR. use, the LRs order in the plot is still according to the first letter of LRs rather than the order in the dataframe. How should I adjust it? Thanks a lot! |
This is a terrific package. It is so smart about signaling, and about visualizations that reduce the HUGE amount of data into intuitive chunks.
This works beautifully
Now I want to reorder the LRpairs (grouping similar patterns together) to make it pretty for publication. I tried using the pairLR.use flag, building a dataframe of LRpairs in the order I wanted. But it returned a plot with the pairs in the same order as the original plot.
Since this did NOT work, is there a way of re-ordering the RLpairs on these plots?
PS. I CAN reorder the cell pairs (somewhat) by changing the order in the sources.use and targets.use flags...
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