Skip to content
This repository has been archived by the owner on Jan 24, 2024. It is now read-only.

about output exact ligand-receptor data of cellchat data #13

Closed
tn00992786 opened this issue Aug 8, 2020 · 1 comment
Closed

about output exact ligand-receptor data of cellchat data #13

tn00992786 opened this issue Aug 8, 2020 · 1 comment

Comments

@tn00992786
Copy link

Dear author,

May I realize how to output exact ligand-receptor list of specific data of pathway? For example, wnt signaling pathway including different ligands participating in signaling transduction, ctgf, dkk2, igfbp4, etc, and receptor of wnt signalling pathway including fzd2, fzd7, lgr5 and lrp6.
Thanks for kind attention.

dentistZ

@sqjin
Copy link
Owner

sqjin commented Aug 9, 2020

Hi @tn00992786 , all the database information is available at CellChatDB.mouse or CellChatDB.human. CellChat provides a function to extract the L-R pairs of particular signaling pathway via pairLR <- searchPair(signaling = "WNT", pairLR.use = CellChatDB$interaction, key = "pathway_name", matching.exact = T, pair.only = F).

@sqjin sqjin closed this as completed Aug 19, 2020
Sign up for free to subscribe to this conversation on GitHub. Already have an account? Sign in.
Labels
None yet
Projects
None yet
Development

No branches or pull requests

2 participants