#!/bin/bash #PBS -N eval #PBS -e eval.out #PBS -o eval.out #PBS -q ai #PBS -l select=1:ncpus=32:ngpus=1:mem=32gb #PBS -l walltime=72:00:00 cd $PBS_O_WORKDIR #module purge #module load Anaconda3 export PATH=/home/lisong/software/anaconda3/bin:$PATH export PATH=/home/lisong/local/bin:$PATH export PATH=/home/lisong/software/openbabel/bin:/home/lisong/software/LeDOCK:$PATH source activate LS-MolGen PROTEIN=EGFR protein=egfr for model in aae vae latentgan reinvent pocket2mol moldqn sbmolgen lsmolgen; do for i in {0..5}; do python calc_metrics.py --gen_path data/${PROTEIN}/${model}/${protein}_${model}_gen_${i}.smi \ --train_path data/chembl31.smi --test_path data/$PROTEIN/${PROTEIN}_pX_7.smi \ --output ./result/${protein}_${model}_gen_${i}_eval_result.csv --n_jobs 32 --device 'cuda' \ --dock_file_dir data/$PROTEIN/ledock \ # --score_path data/baseline/${protein}_${model}_gen.smi done done