Commits

Commits on Jul 22, 2024

Support aarch64 with pip (#639 )
wahabk
committedJul 22, 2024

Commits on Jul 14, 2024

Fix tests
milot-mirdita
committedJul 14, 2024
colabfold_search : allow continuing interrupted runs, disabling unpacking databases
milot-mirdita
committedJul 14, 2024

Commits on Jul 11, 2024

removed ,<3.12 for causing installation issues (#631 )
KeaunAmani
committedJul 11, 2024

Commits on May 12, 2024

specify biopython==1.81 version while installing (#622 )
sid-betalol
committedMay 12, 2024

Commits on May 3, 2024

Expose env pairing to cli
milot-mirdita
committedMay 3, 2024

Commits on May 2, 2024

add environmental pairing feature (#614 )

endixk
and
milot-mirdita
committedMay 2, 2024

Commits on Apr 25, 2024

Skip MSA search when both custom_template and single_sequence provided
YoshitakaMo
committedApr 25, 2024

Commits on Apr 23, 2024

pushing A100 fix (default jaxlib not compatible with A100)
sokrypton
committedApr 23, 2024

Commits on Apr 15, 2024

fixing RF2 for symmetry
sokrypton
committedApr 15, 2024

Commits on Mar 31, 2024

Reduce log output of MMseqs2 in colabfold_search
milot-mirdita
committedMar 31, 2024
Add ungapped-prefilter mode to colabfold_search
milot-mirdita
committedMar 31, 2024

Commits on Mar 29, 2024

fix param switch (need some time for download to start)
sokrypton
committedMar 29, 2024

Commits on Mar 20, 2024

reverting RoseTTAFold2 to default params
sokrypton
committedMar 20, 2024
updating RoseTTAFold2 notebook to remove output example
sokrypton
committedMar 20, 2024

Commits on Mar 8, 2024

Fix cf-af2 notebooks to work on TPU again
milot-mirdita
committedMar 8, 2024

Commits on Mar 7, 2024

Update dm-haiku to 0.0.12
milot-mirdita
committedMar 7, 2024
colabfold_search: fix logger not printing anything
milot-mirdita
committedMar 7, 2024
colabfold_search: Ignoring existing index if MMSEQS_IGNORE_INDEX env var is set
milot-mirdita
committedMar 7, 2024

Commits on Feb 25, 2024

fixing esmfold api
sokrypton
committedFeb 25, 2024

Commits on Feb 24, 2024

correct split of paired and unpaired msas for trimer or higher
YoshitakaMo
committedFeb 24, 2024

Commits on Feb 22, 2024

fix renaming issue for multiple seqs in fasta format (#568 )
YoshitakaMo
committedFeb 22, 2024
Merge pull request #572 from thachung/main
YoshitakaMo
committedFeb 22, 2024
Update utils.py

DimaMolod
authored and
YoshitakaMo
committedFeb 22, 2024
fix template search for csv input (#567 )
YoshitakaMo
committedFeb 22, 2024

Commits on Feb 18, 2024

Update AlphaFold2.ipynb
thachung
committedFeb 18, 2024

Commits on Feb 13, 2024

Replace mmCIF rsync FTP download with AWS CLI download from Amazon S3 PDB Snaphots (#566 )

teodorpopescuQB
and
milot-mirdita
committedFeb 13, 2024

Commits on Jan 31, 2024

Fix template search (#565 )
PasqM
committedJan 31, 2024

Commits on Jan 23, 2024

suppress warnings for jax initialize backend
YoshitakaMo
committedJan 23, 2024

Commits on Jan 8, 2024

Tiny improvements to CLI (#538 )
gieses
committedJan 8, 2024

Commits on Dec 29, 2023

ColabFold 1.5.5
milot-mirdita
committedDec 29, 2023
Set 1.5.3 link to latest working notebook
milot-mirdita
committedDec 29, 2023
Fix tests and dependencies
milot-mirdita
committedDec 29, 2023

Commits on Dec 28, 2023

fixing esmfold_advanced to use pytorch2/cuda12
sokrypton
committedDec 28, 2023
fixing esmfold/openfold to use -std=c++17 (needed for cuda12 and pytorch 2)
sokrypton
committedDec 28, 2023