Accurate sample inference from amplicon data with single nucleotide resolution

🌈 Interactive analysis of metagenomics data

VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data

Curated Metagenomic Data of the Human Microbiome

nanodisco: a toolbox for discovering and exploiting multiple types of DNA methylation from individual bacteria and microbiomes using nanopore sequencing.

PrimerTree: Visually Assessing the Specificity and Informativeness of Primer Pairs

GTDB taxonomy taxdump files with trackable TaxIds

Analysing Metagenomic Species (MGS)

Code and analysis results for the CRC shotgun meta-analysis

Fast alignment-free pangenome creation and exploration

Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9.

Create your own PanViz visualizations

Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019

Testing of phylogenetic inference methods

Bioinformatics pipeline for nanopore sequencing data