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seqkit locate: improve performance of exact searching for lots of search patterns #101

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shenwei356 opened this issue Jan 9, 2020 · 0 comments
Closed

seqkit locate: improve performance of exact searching for lots of search patterns #101

shenwei356 opened this issue Jan 9, 2020 · 0 comments
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shenwei356 commented Jan 9, 2020 •
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Old solution used regular expression search for general cases, but it's too slow. index should be much faster for exact searching, and regular expression matching can be still used for other cases.
@shenwei356 shenwei356 changed the title seqkit locate: parallelizing exact searching for lots of search patterns seqkit locate: improve performance of exact searching for lots of search patterns Jan 9, 2020
shenwei356 added a commit that referenced this issue Jan 10, 2020
@shenwei356
seqkit rename: faster speed for default search. #101
3ba4cb9
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