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Commits on Nov 3, 2024

• Fix standalone usage of {fbne} in seqkit replace (#492)

  Fan-iX

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Commits on Nov 1, 2024

• v2.9.0

  shenwei356

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Commits on Oct 31, 2024

• locate: fix -G/--non-greedy for tandem repeats

  shenwei356

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Commits on Oct 30, 2024

• stats: add an extra column 'sum_n' to count the number of ambiguous characters. #490

  shenwei356

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Commits on Oct 8, 2024

• replace: add more replacements for files: fbn, fbne. #488

  shenwei356

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• add filename support for seqkit replace (#488)

  Fan-iX

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Commits on Sep 17, 2024

• add the link to sandbox.io

  shenwei356

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Commits on Sep 12, 2024

• update the version of sequence parsing package: bio, again

  shenwei356

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Commits on Sep 5, 2024

• fix sequence ID parsing of a rare case. #486

  shenwei356

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Commits on Jul 15, 2024

• Fix negative regions longer than sequence length. #479

  shenwei356

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Commits on May 17, 2024

• v2.8.2

  shenwei356

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• add doc again. #462

  shenwei356

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• add doc. #462

  shenwei356

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Commits on Apr 29, 2024

• split: add flag --ignore-case. #462

  shenwei356

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Commits on Apr 26, 2024

• add changelog for #458

  shenwei356

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• Add option to translate command to skip errors while translating (#458)

  

  khalilchatoo

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Commits on Apr 25, 2024

• amplicon: Fix a big introduced in v2.7.0. When more than one pairs of primers are given, only the last one is used. #457. introduced in fixing #439

  shenwei356

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Commits on Apr 7, 2024

• forgot to update version number and citations

  shenwei356

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• fix changelog

  shenwei356

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• get ready for a new version

  shenwei356

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• add doc. #451

  shenwei356

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Commits on Apr 5, 2024

• add new citation

  shenwei356

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Commits on Mar 19, 2024

• sana: make loging optional, and update doc. #446

  shenwei356

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• Added support for IDs in separator line in sana parser (#446)

  botond-sipos

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Commits on Mar 13, 2024

• update readme

  shenwei356

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  6ec211b
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• fix links

  shenwei356

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• fix English

  shenwei356

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Commits on Mar 11, 2024

• Attentions -> Attention

  shenwei356

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  9f6b088
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• v2.8.0

  shenwei356

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  8a37c92
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• seq: Change the threshold sequence length for parallelizing complement sequence computation

  shenwei356

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Commits on Mar 4, 2024

• fix a typo in error message. thanks @stas-malavin. fix #442

  shenwei356

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Commits on Feb 24, 2024

• Clarify the supported FASTQ dialect in the sana subcommand help message. (#440)

  botond-sipos

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Commits on Feb 22, 2024

• stats: add N50_num (L50). #15

  shenwei356

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Commits on Feb 19, 2024

• amplicon: slightly improve the seed. #439

  shenwei356

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• fix seq validation introduced in v2.7.0. fix #439

  shenwei356

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