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chanzuckerberg/czid-dag
Public archive

Please see https://github.com/chanzuckerberg/czid-workflows for the latest version of CZ ID workflows.
  • Python
  • 27
  • Updated
    on Jan 10, 2022
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chanzuckerberg/czid-cli

CZID (formerly IDseq) infectious disease command-line interface
  • Go
  • 21
  • Updated
    on Jul 22
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chanzuckerberg/idseq-cli
Public archive

IDseq infectious disease command-line interface
  • Python
  • 8
  • Updated
    on Apr 13, 2021
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chanzuckerberg/czid-qa
Public archive

Custom tools to QA new releases of gsnap, rapsearch, STAR, or any other bioinformatics tool used in the IDseq pipeline.
  • Python
  • 1
  • Updated
    on Jan 10, 2022
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chanzuckerberg/czid-copy-tool
Public archive

Utility for copying database reference files
  • Python
  • 0
  • Updated
    on Mar 10, 2020
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chanzuckerberg/czid-bench

CZ ID infectious disease benchmarking tools
  • Python
  • 0
  • Updated
    on Jul 8
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