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Commits on Mar 18, 2023

• Merge pull request #21 from EricDeveaud/master

  robegan21

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  e7b0777
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Commits on Mar 17, 2023

• fix segfault when no arguments given

  EricDeveaud

  committed
  c17a537
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• fix segfault when infile does not exist

  EricDeveaud

  committed
  5b80984
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• fix segfault when infile does not exist

  EricDeveaud

  committed
  335018d
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• fix help + -ro detection

  EricDeveaud

  committed
  5065fca
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Commits on Mar 16, 2023

• add help

  EricDeveaud

  committed
  7e2ad84
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• add help

  EricDeveaud

  committed
  75d9dfc
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• fix help

  EricDeveaud

  committed
  3b155d8
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Commits on May 3, 2022

• Merge pull request #20 from sc932/UpdateSSW

  robegan21

  authored
  2c8e627
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• Merge pull request #19 from alexreg/UpdateSSW

  robegan21

  authored
  6e18937
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• tidy up

  alexreg

  committed
  93c79bc
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• updated ssw files from https://github.com/mengyao/Complete-Striped-Smith-Waterman-Library

  robegan21

  committed
  9f2a24c
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• fixed warnings

  robegan21

  committed
  b7ca27b
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Commits on Nov 16, 2020

• fixed more compiler warnings mostly related to sign and size of int and longs when printing

  robegan21

  committed
  eb7e1d2
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• fixed several warnings when compiling with modern compilers

  robegan21

  committed
  93c5316
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Commits on Sep 4, 2018

• ignore secondary alignments and validate mate pairs too

  robegan21

  committed
  9b0fadd
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Commits on Dec 21, 2017

• Changed documentation hosting site

  robegan21

  committed
  4aec46e
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• ignore documentation in git source

  robegan21

  committed
  1db06cb
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• removed documentation build

  robegan21

  committed
  f7302c2
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Commits on Jan 27, 2016

• fixed gcc-5.2 compiler warnings

  robegan21

  committed
  5fb3b66
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Commits on May 7, 2015

• removed the attempt to plot an empty dataset from plotter3.py

  robegan21

  committed
  defd6f9
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Commits on May 4, 2015

• replaced several assertions with warnings when the bam file has a few types of minor problems

  robegan21

  committed
  be19b49
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Commits on Apr 16, 2015

• fixed abort into warning when MD tags are not consistent with the reference ambiguity bases

  robegan21

  committed
  52f88e0
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Commits on Aug 29, 2014

• Merge pull request #10 from holmrenser/master

  robegan21

  committed
  b9d2d88
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Commits on Aug 18, 2014

• Update ale2wiggle.py

  holmrenser

  committed
  3888534
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Commits on Mar 16, 2014

• removed test from default make target

  robegan21

  committed
  1c60198
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Commits on Jan 20, 2014

• removing test6 (failing with no raw data)

  

  Scott Clark

  committed
  06120e6
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• Updated docs

  

  Scott Clark

  committed
  c11d5e3
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Commits on Jul 19, 2013

• fixed autodetection of isSortedByName to exclude single ended reads like PacBio

  robegan21

  committed
  9ae2506
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• fixed a rare off-by-one error in --realign

  robegan21

  committed
  8864009
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Commits on Jul 18, 2013

• fixed bugs in --realign and applied new cigar and alignment parameters to the placement bam

  robegan21

  committed
  4cc95f5
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• fixed a few memory leaks and segfaults

  

  Rob Egan

  committed
  103245d
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Commits on Jul 17, 2013

• added clean and gitignore files

  

  Rob Egan

  committed
  5b3d15e
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• fixed a segfault with --SNPreport and fixed --pl to actually work

  

  Rob Egan

  committed
  0d64e7a
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Commits on Jul 16, 2013

• fixed a comment

  

  Rob Egan

  committed
  b730e8b
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