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Possible check in liana_prep #131
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Thanks Rene @welch16 I will make sure to change this in the next update :) |
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Hello,
Thanks for sharing this great package. I was trying to use liana to analyze my data, which was a
SingleCellExperiment
object that I have been using for a while.When I tried to use
liana_wrap
directly, I found the following error:which wasn't really informative, using rlang::last_trace didn't revealed a lot either at first glance:
But it turned out that the reason that it was crashing was in the line
S4Vectors::subset.Vector(sce, select = colLabels(sce) == subject)
because I had asubject
column in mycolData
. After changing the name of the column it worked fine, so I thought to let you know about this error because it can be easily addressed in theliana_prep
function.Thanks again, Rene
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