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MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data
BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET/EP/ETP and AUGUSTUS in novel eukaryotic genomes
The original sources of MS-DOS 1.25, 2.0, and 4.0 for reference purposes
Minima is a one-size-fits-all Jekyll theme for writers.
Benchmarking long-form factuality in large language models. Original code for our paper "Long-form factuality in large language models".
Python code for versatile Functional Ontology Assignments for Metagenomes searching via Hidden Markov Model (HMM) with environmental focus of shotgun metaomics data
Accelerate "hjkl" moving. Also works in vscode-neovim.
a tool for inferring species tree from sequencing reads
Vim-fork focused on extensibility and usability
GALBA is a pipeline for fully automated prediction of protein coding gene structures with AUGUSTUS in novel eukaryotic genomes for the scenario where high quality proteins from one or several close…
A repository showing the analyses and surveys used for "Pathogen and pest risk to vegetatively propagated crops in humanitarian contexts: geographic priorities for Cameroon and Ethiopia," by R. A. …
Pipeline to convert a haploid assembly into diploid
Fast and accurately polish the genome generated by long reads.
Drop in a screenshot and convert it to clean code (HTML/Tailwind/React/Vue)
IRESfinder is a python package for the identification of RNA internal ribosome entry site in eukaryotic cell
Versatile open-source tool for microbiome analysis
MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomics
R package for creating early detection maps for plant pests
With RNArtist, you construct a collection of RNA structures that can be gathered into RNA families, projects,...