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Publish VCF files #266
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Ah wait, it seems we publish them to E.g.
are the final variant calls splitted into pass and fail? (what are the default filter values then?) |
Yes, the called variants get split based on The default values in poreCov are 20 for Note, that @jonas-fuchs pointed out that VCFs from ARTIC in Galaxy do have allele frequencies. I didn't have time to test it, but it'd be a |
For many downstream analysis it would be nice to also publish the VCF files with the ref/alternate allele and the frequencies.
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