Commits

Commits on Feb 21, 2024

replacing cat() with warnings() to camply with CRAN requests. ADWGS no longer prints a dot for each computed element.
reimand0
committedFeb 21, 2024

Commits on Sep 3, 2022

fix inherits(class) for CRAN
reimand0
committedSep 3, 2022
Update README.md
reimand0
committedSep 3, 2022
Merge branch 'master' of https://github.com/reimandlab/ActiveDriverWGSR
reimand0
committedSep 3, 2022
news and readme for 1.2.0
reimand0
committedSep 3, 2022
news and readme for 1.20
reimand0
committedSep 3, 2022
v 1.2.0 docs
reimand0
committedSep 3, 2022
update trinuc context; add neg.sel; fix exp. muts
reimand0
committedSep 3, 2022

Commits on Nov 30, 2021

Update README.md
reimand0
committedNov 30, 2021
Update NEWS.md
reimand0
committedNov 30, 2021
misc object docs updates
reimand0
committedNov 30, 2021
include hg object in tests
reimand0
committedNov 30, 2021
enabling mitochrondrial chromosome
reimand0
committedNov 30, 2021
fix granges levels elements/sites syncing for Rdev
reimand0
committedNov 30, 2021
DESC: genome packages now mandatory
reimand0
committedNov 30, 2021

Commits on Apr 22, 2021

v1.1.2: bugfix to address cases where few unmutated elements (<10) would not be reported in end results
reimand0
committedApr 22, 2021

Commits on Sep 17, 2020

bugfix: depletion of mutations would appear as enrichment with certain very large genomic elements
reimand0
committedSep 17, 2020

Commits on Sep 7, 2020

updated URLs of datasets
reimand0
committedSep 7, 2020

Commits on Sep 5, 2020

add docs
reimand0
committedSep 5, 2020
add docs
reimand0
committedSep 5, 2020
add docs
reimand0
committedSep 5, 2020
add docs
reimand0
committedSep 5, 2020
vignette update for gitHub
reimand0
committedSep 5, 2020
vignette update for gitHub
reimand0
committedSep 5, 2020

Commits on Sep 4, 2020

removed duplicate indel counting
reimand0
committedSep 4, 2020
README link to vignette
reimand0
committedSep 4, 2020
README link to vignette
reimand0
committedSep 4, 2020
vignette build update
reimand0
committedSep 4, 2020
updated documentation and example dataset
reimand0
committedSep 4, 2020
updated documentation and example dataset
reimand0
committedSep 4, 2020
Rewritten ADWGS_rest for memory and speed efficiency
reimand0
committedSep 4, 2020

Commits on Sep 2, 2020

added reference genome option for hg38, mm9, mm10; default hg19
reimand0
committedSep 2, 2020

Commits on Sep 1, 2020

placeholders and tests for reference genome option; work in progress
reimand0
committedSep 1, 2020

Commits on Aug 31, 2020

update to permit analysis of indel-only mutation datasets
reimand0
committedAug 31, 2020

Commits on Feb 7, 2020

Update README.md
helen-zhu
committedFeb 7, 2020