⚡ ♒ Rapid prokaryotic genome annotation

✂️ ⚡ Rapid haploid variant calling and core genome alignment

🔎 💊 Mass screening of contigs for antimicrobial and virulence genes

A scalable high-throughput metabolic and biogeochemical functional trait profiler

💾 📃 "Reads to report" for public health and clinical microbiology

Improve the quality of a denovo assembly by scaffolding and gap filling

The overall codebase developed and used by the Vertebrate Resequencing group at the Sanger Institute

Whole genome core alignments from multiple draft genomes

pGWAS and functional filtering pipeline to identify candidate adaptive genetic traits in bacteria