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calling read on 0 dimensional raster fails #473

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maxfreu opened this issue Jul 5, 2023 · 7 comments · Fixed by meggart/DiskArrays.jl#100
Closed

calling read on 0 dimensional raster fails #473

maxfreu opened this issue Jul 5, 2023 · 7 comments · Fixed by meggart/DiskArrays.jl#100

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@maxfreu
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maxfreu commented Jul 5, 2023 •
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Hi! I would have expected read to work in the following case:

someraster = "..."
r = Raster(someraster; lazy=true)
r[X(Near(0)), Y(Near(0)), Band(1)]  # returns value
v = @view r[X(Near(0)), Y(Near(0)), Band(1)]  # returns view and prints nicely
read(v)  # errors with no method matching for copyto! Int16 something deep down in diskarrays

I just dug out old code and I think it used to work. Maybe it can be fixed with some code along the lines of:

function Rasters.read(r::Raster)
    if ndims(r) == 0
        return rebuild(r, first.(r))
    else
        return modify(Array, x)
    end
end

function Rasters.read(r::RasterSeries)
    if ndims(first(r)) == 0
        return rebuild(r, read.(r))
    else
        return modify(Array, x)
    end
end

# sth similar for rasterstack?
@rafaqz
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rafaqz commented Jul 5, 2023 •
edited
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Yeah that should work. Can you paste the error?

MWE is always nice too ;)

@maxfreu
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maxfreu commented Jul 6, 2023

Sorry, I was quite tired yesterday and missed the essential. A minimum failing example is provided in the initial post. Here is the stack trace:

ERROR: MethodError: no method matching copyto!(::Int16, ::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{0}, Tuple{}, typeof(identity), Tuple{Int16}})

Closest candidates are:
  copyto!(::AbstractArray, ::Base.Broadcast.Broadcasted{<:Base.Broadcast.AbstractArrayStyle{0}})
   @ Base broadcast.jl:929
  copyto!(::AbstractArray, ::Base.Broadcast.Broadcasted)
   @ Base broadcast.jl:926
  copyto!(::AbstractArray, ::Any)
   @ Base abstractarray.jl:943

Stacktrace:
  [1] materialize!
    @ ./broadcast.jl:884 [inlined]
  [2] materialize!(dest::Int16, bc::Base.Broadcast.Broadcasted{Base.Broadcast.DefaultArrayStyle{0}, Nothing, typeof(identity), Tuple{Int16}})
    @ Base.Broadcast ./broadcast.jl:881
  [3] (::DiskArrays.var"#59#61"{Array{Int16, 0}, Base.Broadcast.Broadcasted{DiskArrays.ChunkStyle{0}, Tuple{}, typeof(identity), Tuple{DiskArrays.SubDiskArray{Int16, 0}}}})(cnow::Tuple{})
    @ DiskArrays ~/.julia/packages/DiskArrays/4dn4s/src/broadcast.jl:42
  [4] foreach(f::DiskArrays.var"#59#61"{Array{Int16, 0}, Base.Broadcast.Broadcasted{DiskArrays.ChunkStyle{0}, Tuple{}, typeof(identity), Tuple{DiskArrays.SubDiskArray{Int16, 0}}}}, itr::DiskArrays.GridChunks{0})
    @ Base ./abstractarray.jl:3073
  [5] copyto!(dest::Array{Int16, 0}, bc::Base.Broadcast.Broadcasted{DiskArrays.ChunkStyle{0}, Tuple{}, typeof(identity), Tuple{DiskArrays.SubDiskArray{Int16, 0}}})
    @ DiskArrays ~/.julia/packages/DiskArrays/4dn4s/src/broadcast.jl:38
  [6] materialize!
    @ ./broadcast.jl:884 [inlined]
  [7] materialize!
    @ ./broadcast.jl:881 [inlined]
  [8] _Array(a::DiskArrays.SubDiskArray{Int16, 0})
    @ DiskArrays ~/.julia/packages/DiskArrays/4dn4s/src/array.jl:42
  [9] Array(a::DiskArrays.SubDiskArray{Int16, 0})
    @ DiskArrays ~/.julia/packages/DiskArrays/4dn4s/src/array.jl:5
 [10] (::Rasters.var"#31#32"{UnionAll})(O::Raster{Int16, 0, Tuple{}, Tuple{X{Projected{Float64, LinRange{Float64, Int64}, DimensionalData.Dimensions.LookupArrays.ForwardOrdered, DimensionalData.Dimensions.LookupArrays.Regular{Float64}, DimensionalData.Dimensions.LookupArrays.Intervals{DimensionalData.Dimensions.LookupArrays.Start}, DimensionalData.Dimensions.LookupArrays.Metadata{Rasters.GDALsource, Dict{String, Any}}, WellKnownText{GeoFormatTypes.CRS}, Nothing, X{Colon}}}, Y{Projected{Float64, LinRange{Float64, Int64}, DimensionalData.Dimensions.LookupArrays.ReverseOrdered, DimensionalData.Dimensions.LookupArrays.Regular{Float64}, DimensionalData.Dimensions.LookupArrays.Intervals{DimensionalData.Dimensions.LookupArrays.Start}, DimensionalData.Dimensions.LookupArrays.Metadata{Rasters.GDALsource, Dict{String, Any}}, WellKnownText{GeoFormatTypes.CRS}, Nothing, Y{Colon}}}, Band{DimensionalData.Dimensions.LookupArrays.Categorical{Int64, UnitRange{Int64}, DimensionalData.Dimensions.LookupArrays.ForwardOrdered, DimensionalData.Dimensions.LookupArrays.NoMetadata}}}, DiskArrays.SubDiskArray{Int16, 0}, Symbol, DimensionalData.Dimensions.LookupArrays.Metadata{Rasters.GDALsource, Dict{String, Any}}, Int16})
    @ Rasters ~/.julia/dev/Rasters/src/array.jl:128
 [11] (::Rasters.var"#39#40"{Rasters.var"#31#32"{UnionAll}, Raster{Int16, 0, Tuple{}, Tuple{X{Projected{Float64, LinRange{Float64, Int64}, DimensionalData.Dimensions.LookupArrays.ForwardOrdered, DimensionalData.Dimensions.LookupArrays.Regular{Float64}, DimensionalData.Dimensions.LookupArrays.Intervals{DimensionalData.Dimensions.LookupArrays.Start}, DimensionalData.Dimensions.LookupArrays.Metadata{Rasters.GDALsource, Dict{String, Any}}, WellKnownText{GeoFormatTypes.CRS}, Nothing, X{Colon}}}, Y{Projected{Float64, LinRange{Float64, Int64}, DimensionalData.Dimensions.LookupArrays.ReverseOrdered, DimensionalData.Dimensions.LookupArrays.Regular{Float64}, DimensionalData.Dimensions.LookupArrays.Intervals{DimensionalData.Dimensions.LookupArrays.Start}, DimensionalData.Dimensions.LookupArrays.Metadata{Rasters.GDALsource, Dict{String, Any}}, WellKnownText{GeoFormatTypes.CRS}, Nothing, Y{Colon}}}, Band{DimensionalData.Dimensions.LookupArrays.Categorical{Int64, UnitRange{Int64}, DimensionalData.Dimensions.LookupArrays.ForwardOrdered, DimensionalData.Dimensions.LookupArrays.NoMetadata}}}, DiskArrays.SubDiskArray{Int16, 0}, Symbol, DimensionalData.Dimensions.LookupArrays.Metadata{Rasters.GDALsource, Dict{String, Any}}, Int16}})(x::ArchGDAL.RasterDataset{Int16, ArchGDAL.Dataset})
    @ Rasters ~/.julia/dev/Rasters/src/array.jl:203
 [12] call_composed
    @ ./operators.jl:1035 [inlined]
 [13] call_composed
    @ ./operators.jl:1034 [inlined]
 [14] (::ComposedFunction{typeof(Rasters.cleanreturn), Rasters.var"#39#40"{Rasters.var"#31#32"{UnionAll}, Raster{Int16, 0, Tuple{}, Tuple{X{Projected{Float64, LinRange{Float64, Int64}, DimensionalData.Dimensions.LookupArrays.ForwardOrdered, DimensionalData.Dimensions.LookupArrays.Regular{Float64}, DimensionalData.Dimensions.LookupArrays.Intervals{DimensionalData.Dimensions.LookupArrays.Start}, DimensionalData.Dimensions.LookupArrays.Metadata{Rasters.GDALsource, Dict{String, Any}}, WellKnownText{GeoFormatTypes.CRS}, Nothing, X{Colon}}}, Y{Projected{Float64, LinRange{Float64, Int64}, DimensionalData.Dimensions.LookupArrays.ReverseOrdered, DimensionalData.Dimensions.LookupArrays.Regular{Float64}, DimensionalData.Dimensions.LookupArrays.Intervals{DimensionalData.Dimensions.LookupArrays.Start}, DimensionalData.Dimensions.LookupArrays.Metadata{Rasters.GDALsource, Dict{String, Any}}, WellKnownText{GeoFormatTypes.CRS}, Nothing, Y{Colon}}}, Band{DimensionalData.Dimensions.LookupArrays.Categorical{Int64, UnitRange{Int64}, DimensionalData.Dimensions.LookupArrays.ForwardOrdered, DimensionalData.Dimensions.LookupArrays.NoMetadata}}}, DiskArrays.SubDiskArray{Int16, 0}, Symbol, DimensionalData.Dimensions.LookupArrays.Metadata{Rasters.GDALsource, Dict{String, Any}}, Int16}}})(x::ArchGDAL.RasterDataset{Int16, ArchGDAL.Dataset}; kw::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
    @ Base ./operators.jl:1031
 [15] (::ComposedFunction{typeof(Rasters.cleanreturn), Rasters.var"#39#40"{Rasters.var"#31#32"{UnionAll}, Raster{Int16, 0, Tuple{}, Tuple{X{Projected{Float64, LinRange{Float64, Int64}, DimensionalData.Dimensions.LookupArrays.ForwardOrdered, DimensionalData.Dimensions.LookupArrays.Regular{Float64}, DimensionalData.Dimensions.LookupArrays.Intervals{DimensionalData.Dimensions.LookupArrays.Start}, DimensionalData.Dimensions.LookupArrays.Metadata{Rasters.GDALsource, Dict{String, Any}}, WellKnownText{GeoFormatTypes.CRS}, Nothing, X{Colon}}}, Y{Projected{Float64, LinRange{Float64, Int64}, DimensionalData.Dimensions.LookupArrays.ReverseOrdered, DimensionalData.Dimensions.LookupArrays.Regular{Float64}, DimensionalData.Dimensions.LookupArrays.Intervals{DimensionalData.Dimensions.LookupArrays.Start}, DimensionalData.Dimensions.LookupArrays.Metadata{Rasters.GDALsource, Dict{String, Any}}, WellKnownText{GeoFormatTypes.CRS}, Nothing, Y{Colon}}}, Band{DimensionalData.Dimensions.LookupArrays.Categorical{Int64, UnitRange{Int64}, DimensionalData.Dimensions.LookupArrays.ForwardOrdered, DimensionalData.Dimensions.LookupArrays.NoMetadata}}}, DiskArrays.SubDiskArray{Int16, 0}, Symbol, DimensionalData.Dimensions.LookupArrays.Metadata{Rasters.GDALsource, Dict{String, Any}}, Int16}}})(x::ArchGDAL.RasterDataset{Int16, ArchGDAL.Dataset})
    @ Base ./operators.jl:1031
 [16] readraster(f::ComposedFunction{typeof(Rasters.cleanreturn), Rasters.var"#39#40"{Rasters.var"#31#32"{UnionAll}, Raster{Int16, 0, Tuple{}, Tuple{X{Projected{Float64, LinRange{Float64, Int64}, DimensionalData.Dimensions.LookupArrays.ForwardOrdered, DimensionalData.Dimensions.LookupArrays.Regular{Float64}, DimensionalData.Dimensions.LookupArrays.Intervals{DimensionalData.Dimensions.LookupArrays.Start}, DimensionalData.Dimensions.LookupArrays.Metadata{Rasters.GDALsource, Dict{String, Any}}, WellKnownText{GeoFormatTypes.CRS}, Nothing, X{Colon}}}, Y{Projected{Float64, LinRange{Float64, Int64}, DimensionalData.Dimensions.LookupArrays.ReverseOrdered, DimensionalData.Dimensions.LookupArrays.Regular{Float64}, DimensionalData.Dimensions.LookupArrays.Intervals{DimensionalData.Dimensions.LookupArrays.Start}, DimensionalData.Dimensions.LookupArrays.Metadata{Rasters.GDALsource, Dict{String, Any}}, WellKnownText{GeoFormatTypes.CRS}, Nothing, Y{Colon}}}, Band{DimensionalData.Dimensions.LookupArrays.Categorical{Int64, UnitRange{Int64}, DimensionalData.Dimensions.LookupArrays.ForwardOrdered, DimensionalData.Dimensions.LookupArrays.NoMetadata}}}, DiskArrays.SubDiskArray{Int16, 0}, Symbol, DimensionalData.Dimensions.LookupArrays.Metadata{Rasters.GDALsource, Dict{String, Any}}, Int16}}}, args::String; kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
    @ ArchGDAL ~/.julia/packages/ArchGDAL/R3wJR/src/context.jl:267
 [17] readraster(f::Function, args::String)
    @ ArchGDAL ~/.julia/packages/ArchGDAL/R3wJR/src/context.jl:264
 [18] _open(f::Function, ::Type{Rasters.GDALsource}, filename::String; write::Bool, kw::Base.Pairs{Symbol, Nothing, Tuple{Symbol}, NamedTuple{(:key,), Tuple{Nothing}}})
    @ RastersArchGDALExt ~/.julia/dev/Rasters/ext/RastersArchGDALExt/gdal_source.jl:136
 [19] _open
    @ ~/.julia/dev/Rasters/ext/RastersArchGDALExt/gdal_source.jl:122 [inlined]
 [20] #open#21
    @ ~/.julia/dev/Rasters/src/filearray.jl:40 [inlined]
 [21] open
    @ ~/.julia/dev/Rasters/src/filearray.jl:39 [inlined]
 [22] #_open_one#38
    @ ~/.julia/dev/Rasters/src/array.jl:199 [inlined]
 [23] _open_one(f::Function, A::Raster{Int16, 0, Tuple{}, Tuple{X{Projected{Float64, LinRange{Float64, Int64}, DimensionalData.Dimensions.LookupArrays.ForwardOrdered, DimensionalData.Dimensions.LookupArrays.Regular{Float64}, DimensionalData.Dimensions.LookupArrays.Intervals{DimensionalData.Dimensions.LookupArrays.Start}, DimensionalData.Dimensions.LookupArrays.Metadata{Rasters.GDALsource, Dict{String, Any}}, WellKnownText{GeoFormatTypes.CRS}, Nothing, X{Colon}}}, Y{Projected{Float64, LinRange{Float64, Int64}, DimensionalData.Dimensions.LookupArrays.ReverseOrdered, DimensionalData.Dimensions.LookupArrays.Regular{Float64}, DimensionalData.Dimensions.LookupArrays.Intervals{DimensionalData.Dimensions.LookupArrays.Start}, DimensionalData.Dimensions.LookupArrays.Metadata{Rasters.GDALsource, Dict{String, Any}}, WellKnownText{GeoFormatTypes.CRS}, Nothing, Y{Colon}}}, Band{DimensionalData.Dimensions.LookupArrays.Categorical{Int64, UnitRange{Int64}, DimensionalData.Dimensions.LookupArrays.ForwardOrdered, DimensionalData.Dimensions.LookupArrays.NoMetadata}}}, DiskArrays.SubDiskArray{Int16, 0}, Symbol, DimensionalData.Dimensions.LookupArrays.Metadata{Rasters.GDALsource, Dict{String, Any}}, Int16}, fa::Rasters.FileArray{Rasters.GDALsource, Int16, 3, Nothing, DiskArrays.GridChunks{3}, DiskArrays.Chunked})
    @ Rasters ~/.julia/dev/Rasters/src/array.jl:198
 [24] open(f::Rasters.var"#31#32"{UnionAll}, A::Raster{Int16, 0, Tuple{}, Tuple{X{Projected{Float64, LinRange{Float64, Int64}, DimensionalData.Dimensions.LookupArrays.ForwardOrdered, DimensionalData.Dimensions.LookupArrays.Regular{Float64}, DimensionalData.Dimensions.LookupArrays.Intervals{DimensionalData.Dimensions.LookupArrays.Start}, DimensionalData.Dimensions.LookupArrays.Metadata{Rasters.GDALsource, Dict{String, Any}}, WellKnownText{GeoFormatTypes.CRS}, Nothing, X{Colon}}}, Y{Projected{Float64, LinRange{Float64, Int64}, DimensionalData.Dimensions.LookupArrays.ReverseOrdered, DimensionalData.Dimensions.LookupArrays.Regular{Float64}, DimensionalData.Dimensions.LookupArrays.Intervals{DimensionalData.Dimensions.LookupArrays.Start}, DimensionalData.Dimensions.LookupArrays.Metadata{Rasters.GDALsource, Dict{String, Any}}, WellKnownText{GeoFormatTypes.CRS}, Nothing, Y{Colon}}}, Band{DimensionalData.Dimensions.LookupArrays.Categorical{Int64, UnitRange{Int64}, DimensionalData.Dimensions.LookupArrays.ForwardOrdered, DimensionalData.Dimensions.LookupArrays.NoMetadata}}}, DiskArrays.SubDiskArray{Int16, 0}, Symbol, DimensionalData.Dimensions.LookupArrays.Metadata{Rasters.GDALsource, Dict{String, Any}}, Int16}; kw::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
    @ Rasters ~/.julia/dev/Rasters/src/array.jl:191
 [25] open(f::Function, A::Raster{Int16, 0, Tuple{}, Tuple{X{Projected{Float64, LinRange{Float64, Int64}, DimensionalData.Dimensions.LookupArrays.ForwardOrdered, DimensionalData.Dimensions.LookupArrays.Regular{Float64}, DimensionalData.Dimensions.LookupArrays.Intervals{DimensionalData.Dimensions.LookupArrays.Start}, DimensionalData.Dimensions.LookupArrays.Metadata{Rasters.GDALsource, Dict{String, Any}}, WellKnownText{GeoFormatTypes.CRS}, Nothing, X{Colon}}}, Y{Projected{Float64, LinRange{Float64, Int64}, DimensionalData.Dimensions.LookupArrays.ReverseOrdered, DimensionalData.Dimensions.LookupArrays.Regular{Float64}, DimensionalData.Dimensions.LookupArrays.Intervals{DimensionalData.Dimensions.LookupArrays.Start}, DimensionalData.Dimensions.LookupArrays.Metadata{Rasters.GDALsource, Dict{String, Any}}, WellKnownText{GeoFormatTypes.CRS}, Nothing, Y{Colon}}}, Band{DimensionalData.Dimensions.LookupArrays.Categorical{Int64, UnitRange{Int64}, DimensionalData.Dimensions.LookupArrays.ForwardOrdered, DimensionalData.Dimensions.LookupArrays.NoMetadata}}}, DiskArrays.SubDiskArray{Int16, 0}, Symbol, DimensionalData.Dimensions.LookupArrays.Metadata{Rasters.GDALsource, Dict{String, Any}}, Int16})
    @ Rasters ~/.julia/dev/Rasters/src/array.jl:184
 [26] modify(f::Type{Array}, A::Raster{Int16, 0, Tuple{}, Tuple{X{Projected{Float64, LinRange{Float64, Int64}, DimensionalData.Dimensions.LookupArrays.ForwardOrdered, DimensionalData.Dimensions.LookupArrays.Regular{Float64}, DimensionalData.Dimensions.LookupArrays.Intervals{DimensionalData.Dimensions.LookupArrays.Start}, DimensionalData.Dimensions.LookupArrays.Metadata{Rasters.GDALsource, Dict{String, Any}}, WellKnownText{GeoFormatTypes.CRS}, Nothing, X{Colon}}}, Y{Projected{Float64, LinRange{Float64, Int64}, DimensionalData.Dimensions.LookupArrays.ReverseOrdered, DimensionalData.Dimensions.LookupArrays.Regular{Float64}, DimensionalData.Dimensions.LookupArrays.Intervals{DimensionalData.Dimensions.LookupArrays.Start}, DimensionalData.Dimensions.LookupArrays.Metadata{Rasters.GDALsource, Dict{String, Any}}, WellKnownText{GeoFormatTypes.CRS}, Nothing, Y{Colon}}}, Band{DimensionalData.Dimensions.LookupArrays.Categorical{Int64, UnitRange{Int64}, DimensionalData.Dimensions.LookupArrays.ForwardOrdered, DimensionalData.Dimensions.LookupArrays.NoMetadata}}}, DiskArrays.SubDiskArray{Int16, 0}, Symbol, DimensionalData.Dimensions.LookupArrays.Metadata{Rasters.GDALsource, Dict{String, Any}}, Int16})
    @ Rasters ~/.julia/dev/Rasters/src/array.jl:127
 [27] read(x::Raster{Int16, 0, Tuple{}, Tuple{X{Projected{Float64, LinRange{Float64, Int64}, DimensionalData.Dimensions.LookupArrays.ForwardOrdered, DimensionalData.Dimensions.LookupArrays.Regular{Float64}, DimensionalData.Dimensions.LookupArrays.Intervals{DimensionalData.Dimensions.LookupArrays.Start}, DimensionalData.Dimensions.LookupArrays.Metadata{Rasters.GDALsource, Dict{String, Any}}, WellKnownText{GeoFormatTypes.CRS}, Nothing, X{Colon}}}, Y{Projected{Float64, LinRange{Float64, Int64}, DimensionalData.Dimensions.LookupArrays.ReverseOrdered, DimensionalData.Dimensions.LookupArrays.Regular{Float64}, DimensionalData.Dimensions.LookupArrays.Intervals{DimensionalData.Dimensions.LookupArrays.Start}, DimensionalData.Dimensions.LookupArrays.Metadata{Rasters.GDALsource, Dict{String, Any}}, WellKnownText{GeoFormatTypes.CRS}, Nothing, Y{Colon}}}, Band{DimensionalData.Dimensions.LookupArrays.Categorical{Int64, UnitRange{Int64}, DimensionalData.Dimensions.LookupArrays.ForwardOrdered, DimensionalData.Dimensions.LookupArrays.NoMetadata}}}, DiskArrays.SubDiskArray{Int16, 0}, Symbol, DimensionalData.Dimensions.LookupArrays.Metadata{Rasters.GDALsource, Dict{String, Any}}, Int16})
    @ Rasters ~/.julia/dev/Rasters/src/read.jl:9
 [28] top-level scope
    @ ~/projects/force_cutouts/sandbox.jl:69

To me this roughly looks like "help, I can't write an array object into an int". That's why I'm manually rebuilding the raster in the suggested fix.

@maxfreu
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maxfreu commented Jul 6, 2023 •
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The only thing I'm unsure about is whether the call to read should return the Raster with all the refdims, or just the value.

Edit: Actually, I think reading a view into a raster should behave like the direct getindex call, returning the value.

@rafaqz
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rafaqz commented Jul 6, 2023

It looks like a DiskArrays.jl bug with zero dimensional arrays.

Its calling Array on a SubDiskArray, so if it gets that far its not a Rasters.jl problem.

@maxfreu
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maxfreu commented Jul 6, 2023 •
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Ah ok, good to know. I thought it's maybe an error with how DiskArray is called - but I must admit that I'm not familiar with these internals. Maybe @meggart knows what's going wrong? Should I open an issue there?

This was referenced Jul 7, 2023
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@meggart
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meggart commented Jul 7, 2023

Yes, it was a DiskArrays.jl bug. The fix is here: meggart/DiskArrays.jl#100

@rafaqz
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rafaqz commented Jul 7, 2023

Thanks for the quick fix @meggart

@rafaqz rafaqz closed this as completed Jul 7, 2023
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@rafaqz @meggart @maxfreu