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clmedview

This project is an attempt to create a cross-platform medical image viewer specialized in drawing "regions of interests".

First off, the project aims to create a useful toolkit for displaying and interacting with medical images. Currently, only some NIFTII file types are implemented. Feel free to add (or request) support for other formats.

Secondly, the project aims to provide a useful graphical user interface.

Dependencies

Make sure you have the following libraries, development packages and build tools installed:

  • GCC or CLANG
  • Automake
  • Autoconf
  • Make
  • Gtk+-3.0 and GLib-2.0
  • Clutter and Clutter-Gtk
  • zlib

To build the documentation you need some more programs:

  • Texinfo
  • Dia
  • Doxygen
  • Dot (for diagrams inside Doxygen output)

Build instructions for GNU/Linux

When you have resolved the dependencies listed above you can build the program by running:

autoreconf -i
./configure
make

To compile with CLANG:

autoreconf -i
./configure CC=clang
make

Additionally you can add compiler flags:

autoreconf -i
./configure CFLAGS="-Wall -O2 -march=native"
make

Optionally you can generate developer documentation using Doxygen.

make docs-doxygen

Debugging options

The following compiler flags enable debug messages:

  • -DENABLE_DEBUG_FUNCTIONS: Print the name of a function when called.
  • -DENABLE_DEBUG_EVENTS: Print the name of an event handler when called.
  • -DENABLE_DEBUG_EXTRA: Print extra debug messages.
  • -DENABLE_DEBUG_WARNING: Print warning messages.
  • -DENABLE_DEBUG_ERROR: Print error messages.
  • -DENABLE_DEBUG: Enable all of the above.

Typically you can enable debugging by running:

./configure CFLAGS="-DENABLE_DEBUG"

To use mtrace as alternative to valgrind, you should define ENABLE_MTRACE:

./configure CFLAGS="-g -DENABLE_MTRACE"

You need to set the MALLOC_TRACE environment variable to a file:

export MALLOC_TRACE=mtrace.out

Running mtrace after your program has finished returns a list of memory leaks:

mtrace clmedview mtrace.out

Build instructions for Windows

WARNING: The Windows build currently doesn't work.

  1. Install MSYS2 from MSYS2
  2. Resolve the dependencies for this project.
  3. Follow the instructions for GNU/Linux.

Build instructions for Mac OSX

  1. Install MacPorts from MacPorts
  2. Resolve the dependencies for this project.
  3. Follow the instructions for GNU/Linux.

License

This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.