drill down options for F-P linking

[ValWood]

I'm not sure why, but in the extension options for F-P linking I cannot locate the term

positive regulation of G2/M transition of mitotic cell cycle

in a search?

top hits are longer terms like
positive regulation of G2/M transition of mitotic cell cycle involved in yada yada

I can find it if I use GO:0010971

[ValWood]

...and I see it if I search on this string in the Canto main GO term search so its only extensions.

This seems like a configuration file issue, but I'm not sure why....

[ValWood]

similarly it did not give me
"protein processing" in the during process extension, but found it with GO:0016485

[kimrutherford]

but in the extension options for F-P linking I cannot locate the term

Which term were you adding the extension to? I'll check the config.

[ValWood]

the terms I was looking for were
positive regulation of G2/M transition of mitotic cell cycle
and
protein processing

They are exact matches so I would expect them to be top hits but they did not appear in the list?

This extension should allow any BP term

[ValWood]

GO:0009987 cellular process, that's probably why.... will check parents

[ValWood]

positive regulation of G2/M transition of mitotic cell cycle
has a cellular process parent, so we should see that?

[kimrutherford]

GO:0009987 cellular process, that's probably why

I'm still not following. I added an annotation to GO:0009987 and it didn't offer me any extension options at all. What am I missing?

[ValWood]

GO:0009987 cellular process
would not give you any extension option, it has non configured because we don't use it directy for annotation.

The terms which were not giving me the expected extensin prompts were
molecular function terms

I was trying to add Function-process links to link "Molecular functions" to "biological processes "using
positive regulation of G2/M transition of mitotic cell cycle
and
protein processing

using the prompt "involved in biological process"

This is configured at the top of the function ontology (any MF) and very high up the process graph part_of(ANY cellular process)

Using
GO:0003674 is_a part_of GO:0009987 involved in biological process 0,1 user

but, I don't find some GO terms which should match exactly (namely

positive regulation of G2/M transition of mitotic cell cycle
and
protein processing
which are exact matches to GO process terms under GO:0009987

[ValWood]

first protein processing is no longer a cellular process GO:0009987
(in fact cellular localization is no longer a cellular process)

we can work around this and add the links in free text mode

geneontology/go-ontology#12849

[ValWood]

and this time I could find
positive regulation of G2/M transition of mitotic cell cycle