Commits

Commits on Feb 20, 2019

Update readme
pmoris
committedFeb 20, 2019

Commits on May 17, 2018

Update statsmodels documentation link
pmoris
committedMay 17, 2018

Commits on May 14, 2018

Update docstrings
pmoris
committedMay 14, 2018

Commits on May 13, 2018

Update readme and toc
pmoris
committedMay 13, 2018
Update readme
pmoris
committedMay 13, 2018
Change readme to rst and point sphinx to it
pmoris
committedMay 13, 2018
Add sphinx documentation
pmoris
committedMay 13, 2018
Add import statements to __init__.py
pmoris
committedMay 13, 2018

Commits on May 7, 2018

Change statsmodels sandbox to statsmodels.stats.multitest and update readme/help/setup
pmoris
committedMay 7, 2018
Update README with installation and usage instructions for script version
pmoris
committedMay 7, 2018
Separate script and module
pmoris
committedMay 7, 2018

Commits on Apr 20, 2018

Add stand-alone command line option
pmoris
committedApr 20, 2018

Commits on Mar 28, 2018

Fixes warning dictionary of terms that are inconsistent between gaf and obo.
pmoris
committedMar 28, 2018
Adds example format for background and subset files
pmoris
committedMar 28, 2018
Updates README
pmoris
committedMar 28, 2018
Adds additional flag options.
pmoris
committedMar 28, 2018
Tidy code
pmoris
committedMar 28, 2018

Commits on Mar 23, 2018

Move parallelization attempts to separate branch
pmoris
committedMar 23, 2018

Commits on Mar 21, 2018

Code clean up plus gaf vs go consistency check
pmoris
committedMar 21, 2018
Parallellization tests
pmoris
committedMar 21, 2018
Clarifies documentation and refactors multiple testing function
pmoris
committedMar 21, 2018

Commits on Mar 20, 2018

Incorporates secondary identifiers
pmoris
committedMar 20, 2018
Yapf formatting
pmoris
committedMar 20, 2018

Commits on Mar 19, 2018

Convert gaf subset creator to dict comprehension
pmoris
committedMar 19, 2018

Commits on Oct 5, 2017

Merge branch 'local-hierarchy'
pmoris
committedOct 5, 2017
Add testing documentation.
pmoris
committedOct 5, 2017

Commits on Sep 26, 2017

Correctly includes all children of a term during enrichment test
pmoris
committedSep 26, 2017

Commits on Sep 25, 2017

Add namespace filter for GO tree depth function
pmoris
committedSep 25, 2017
Change testing threshold argument flag
pmoris
committedSep 25, 2017
Updates documentation
pmoris
committedSep 25, 2017

Commits on Jul 13, 2017

Implement function to assign depth to each GO term in the hierarchy.
pmoris
committedJul 13, 2017
Find base GO terms by finding parents in full recursive ancestor set.
pmoris
committedJul 13, 2017
Fix spelling in documentation.
pmoris
committedJul 13, 2017

Commits on Jul 12, 2017

Allow inclusion or exclusion of part_of relationship
pmoris
committedJul 12, 2017
Store immediate parent and child nodes for each GO term
pmoris
committedJul 12, 2017