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Python3 library to format physiological files in BIDS. At the moment, it supports Acqknowledge and Labchart. BrainHack participants, check the issues with the BrainHack labels!

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physiopy/phys2bids

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Phys2BIDS

phys2bids

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All Contributors

phys2bids is a python3 library meant to format physiological files in BIDS. It was born for AcqKnowledge files (BIOPAC), and at the moment it supports .acq files as well as .txt files obtained by labchart (ADInstruments). It doesn't support physiological files recorded with the MRI, as you can find a software for it here.

If you use phys2bids in your work, please cite it with the zenodo DOI. You can check it here

Read the latest documentation for more information on phys2bids!

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The BrainWeb

BrainWeb participants, welcome! We have a milestone here as a collection of issues you could work on with our help. Check the issues with a BrainWeb label. Of course, they are only suggestions, so feel free to tackle any issue you want, even open new ones! You can also contact us on Gitter, in the BrainHack Mattermost (#physiopy), and don't hesitate to contact Stefano in other ways to jump in the development!

We're looking for code contributors, but any suggestion/bug report is welcome! Feel free to open issues!

This project follows the all-contributors specification. Contributions of any kind welcome!

Contributors ✨

Thanks goes to these wonderful people (emoji key):


Daniel Alcalá

🎨

Apoorva Ayyagari

🖋 🔣 📖

Molly Bright

🖋 🔣 🤔

Cesar Caballero Gaudes

🖋 🔣 🤔

Vicente Ferrer

🐛 💻 📖 👀

Soichi Hayashi

🐛

François Lespinasse

💻 ⚠️

Ross Markello

🐛 💻 🖋 🤔 🚇 👀 ⚠️

Stefano Moia

💻 🖋 🔣 🤔 🚇 📆 👀 📖

Robert Oostenveld

🤔 👀

Taylor Salo

🤔 💻

Rachael Stickland

🐛 💻 🔣 📖 📓

Eneko Uruñuela

🐛 💻 🚇 👀 ⚠️

Kristina Zvolanek

🔣 🖋 📖

License

Copyright 2019-2020, The Phys2BIDS community.

Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at

http:https://www.apache.org/licenses/LICENSE-2.0

Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.