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Count is reserved for internal use #21

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nromashchenko opened this issue Jun 16, 2023 · 0 comments
Open

Count is reserved for internal use #21

nromashchenko opened this issue Jun 16, 2023 · 0 comments
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@nromashchenko
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Under new versions of snakemake (e.g. mine is 7.24.2), the eval_accuracy workflow does not run with:

invalid name for input, output, wildcard, params or log: count is reserved for internal use
  File "/home/nikolai/dev/pewo_workflow/eval_accuracy.smk", line 27, in <module>
  File "/home/nikolai/dev/pewo_workflow/rules/op/operate_prunings.smk", line 72, in <module>

It does not happen with snakemake 5.10.0 (the version PEWO requires in the envs/environment.yaml and uses by default). Seemingly it happens as early as for 5.18.1. Just need to rename the parameter count to something else like pruning_count when updating dependencies of PEWO.

@nromashchenko nromashchenko added the bug Something isn't working label Jun 16, 2023
@nromashchenko nromashchenko changed the title Bug: count is reserved for internal use Count is reserved for internal use Jun 16, 2023
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