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ppi_utils.h
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ppi_utils.h
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/*
* Copyright (c) 2014 Patrick Flick <[email protected]>
*
* Permission is hereby granted, free of charge, to any person obtaining
* a copy of this software and associated documentation files (the "Software"),
* to deal in the Software without restriction, including without limitation
* the rights to use, copy, modify, merge, publish, distribute, sublicense,
* and/or sell copies of the Software, and to permit persons to whom the
* Software is furnished to do so, subject to the following conditions:
*
* The above copyright notice and this permission notice shall be included
* in all copies or substantial portions of the Software.
*
* THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
* EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES
* OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
* IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM,
* DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT,
* TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE
* OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.
*
*/
#ifndef TSPPI_PPI_UTILS_H
#define TSPPI_PPI_UTILS_H
#include <string>
/// The PPis used in this work
std::string ppis[5] = {"ccsb", "string", "bossi", "psicquic_all", "havu"};
/// The expression datasets used
std::string expr[5] = {"hpa", "hpa_all", "emtab", "rnaseq_atlas", "gene_atlas"};
/**
* @brief Executes the given function for each PPI.
*/
template<typename T>
void foreach_ppi(T handle)
{
for (std::string p : ppis)
{
handle(p);
}
}
/**
* @brief Executes the given function for all combinations of
* PPI networks and expression datasets.
*/
template<typename T>
void foreach_ppi_expr(T handle)
{
for (std::string p : ppis)
for (std::string e : expr)
{
handle(p, e);
}
}
#endif // TSPPI_PPI_UTILS_H